Natural Ecosystems

This article provides a proof of concept for using a biogeochemical/ecosystem/optical model with a radiative transfer component as a laboratory to explore aspects of ocean colour. We focus here on the satellite ocean colour chlorophyll a (Chl a) product provided by the often-used blue/green reflectance ratio algorithm. The model produces output that can be compared directly to the real-world ocean colour remotely sensed reflectance. This model output can then be used to produce an ocean colour satellite-like Chl a product using an algorithm linking the blue versus green reflectance similar to that used for the real world. Given that the model includes complete knowledge of the (model) water constituents, optics and reflectance, we can explore uncertainties and their causes in this proxy for Chl a (called derived Chl ain this paper). We compare the derived Chl a to the actual model Chl a field. In the model we find that the mean absolute bias due to the algorithm is 22 % between derived and actual Chl a. The real-world algorithm is found using concurrent in situ measurement of Chl a and radiometry. We ask whether increased in situ measurements to train the algorithm would improve the algorithm, and find a mixed result. There is a global overall improvement, but at the expense of some regions, especially in lower latitudes where the biases increase. Not surprisingly, we find that region-specific algorithms provide a significant improvement, at least in the annual mean. However, in the model, we find that no matter how the algorithm coefficients are found there can be a temporal mismatch between the derived Chl a and the actual Chl a. These mismatches stem from temporal decoupling between Chl a and other optically important water constituents (such as coloured dissolved organic matter and detrital matter). The degree of decoupling differs regionally and over time. For example, in many highly seasonal regions, the timing of initiation and peak of the spring bloom in the derived Chl a lags the actual Chl a by days and sometimes weeks. These results indicate that care should also be taken when studying phenology through satellite-derived products of Chl a. This study also reemphasizes that ocean-colour-derived Chl a is not the same as the real in situ Chl a. In fact the model derived Chl a compares better to real-world satellite-derived Chl a than the model actual Chl a. Modellers should keep this is mind when evaluating model output with ocean colour Chl a and in particular when assimilating this product. Our goal is to illustrate the use of a numerical laboratory that (a) helps users of ocean colour, particularly modellers, gain further understanding of the products they use and (b) helps the ocean colour community to explore other ocean colour products, their biases and uncertainties, as well as to aid in future algorithm development.

To improve our understanding of the role of phytoplankton for marine ecosystems and global biogeochemical cycles, information on the global distribution of major phytoplankton groups is essential. Although algorithms have been developed to assess phytoplankton diversity from space for over two decades, so far the application of these data sets has been limited. This scientific roadmap identifies user needs, summarizes the current state of the art, and pinpoints major gaps in long-term objectives to deliver space-derived phytoplankton diversity data that meets the user requirements. These major gaps in using ocean color to estimate phytoplankton community structure were identified as: (a) the mismatch between satellite, in situ and model data on phytoplankton composition, (b) the lack of quantitative uncertainty estimates provided with satellite data, (c) the spectral limitation of current sensors to enable the full exploitation of backscattered sunlight, and (d) the very limited applicability of satellite algorithms determining phytoplankton composition for regional, especially coastal or inland, waters. Recommendation for actions include but are not limited to: (i) an increased communication and round-robin exercises among and within the related expert groups, (ii) the launching of higher spectrally and spatially resolved sensors, (iii) the development of algorithms that exploit hyperspectral information, and of (iv) techniques to merge and synergistically use the various streams of continuous information on phytoplankton diversity from various satellite sensors' and in situ data to ensure long-term monitoring of phytoplankton composition.

We present a systematic study of the differences generated by coupling the same ecological–biogeochemical model to a 1°, coarse-resolution, and 1∕6°, eddy-permitting, global ocean circulation model to (a) biogeochemistry (e.g., primary production) and (b) phytoplankton community structure. Surprisingly, we find that the modeled phytoplankton community is largely unchanged, with the same phenotypes dominating in both cases. Conversely, there are large regional and seasonal variations in primary production, phytoplankton and zooplankton biomass. In the subtropics, mixed layer depths (MLDs) are, on average, deeper in the eddy-permitting model, resulting in higher nutrient supply driving increases in primary production and phytoplankton biomass. In the higher latitudes, differences in winter mixed layer depths, the timing of the onset of the spring bloom and vertical nutrient supply result in lower primary production in the eddy-permitting model. Counterintuitively, this does not drive a decrease in phytoplankton biomass but results in lower zooplankton biomass. We explain these similarities and differences in the model using the framework of resource competition theory, and find that they are the consequence of changes in the regional and seasonal nutrient supply and light environment, mediated by differences in the modeled mixed layer depths. Although previous work has suggested that complex models may respond chaotically and unpredictably to changes in forcing, we find that our model responds in a predictable way to different ocean circulation forcing, despite its complexity. The use of frameworks, such as resource competition theory, provides a tractable way to explore the differences and similarities that occur. As this model has many similarities to other widely used biogeochemical models that also resolve multiple phytoplankton phenotypes, this study provides important insights into how the results of running these models under different physical conditions might be more easily understood.

Diatoms sustain the marine food web and contribute to the export of carbon from the surface ocean to depth. They account for about 40% of marine primary productivity and particulate carbon exported to depth as part of the biological pump. Diatoms have long been known to be abundant in turbulent, nutrient-rich waters, but observations and simulations indicate that they are dominant also in meso- and submesoscale structures such as fronts and filaments, and in the deep chlorophyll maximum. Diatoms vary widely in size, morphology and elemental composition, all of which control the quality, quantity and sinking speed of biogenic matter to depth. In particular, their silica shells provide ballast to marine snow and faecal pellets, and can help transport carbon to both the mesopelagic layer and deep ocean. Herein we show that the extent to which diatoms contribute to the export of carbon varies by diatom type, with carbon transfer modulated by the Si/C ratio of diatom cells, the thickness of the shells and their life strategies; for instance, the tendency to form aggregates or resting spores. Model simulations project a decline in the contribution of diatoms to primary production everywhere outside of the Southern Ocean. We argue that we need to understand changes in diatom diversity, life cycle and plankton interactions in a warmer and more acidic ocean in much more detail to fully assess any changes in their contribution to the biological pump.

The effect of biodiversity on ecosystem functioning is one of the major questions of ecology. However, the role of phytoplankton functional diversity in ecosystem productivity and stability under fluctuating (i.e. non-equilibrium) environments remains largely unknown. Here we use a marine ecosystem model to study the effect of phytoplankton functional diversity on both ecosystem productivity and its stability for seasonally variable nutrient supply and temperature. Functional diversity ranges from low to high along these two environmental axes independently. Changes in diversity are obtained by varying the range of uptake strategies and thermal preferences of the species present in the community. Species can range from resource gleaners to opportunists, and from cold to warm thermal preferences. The phytoplankton communities self-assemble as a result of species selection by resource competition (nutrients) and environmental filtering (temperature). Both processes lead to species asynchrony but their effect on productivity and stability differ. We find that the diversity of temperature niches has a strong and direct positive effect on productivity and stability due to species complementarity, while the diversity of uptake strategies has a weak and indirect positive effect due to sampling probability. These results show that more functionally diverse phytoplankton communities lead to higher and more stable ecosystem productivity but the positive effect of biodiversity on ecosystem functioning depends critically on the type of environmental gradient.

How might climate change affect the acidification of the world’s oceans or air quality in China and india in the coming decades, and what climate policies could be effective in minimizing such impacts? To answer such questions, decision-makers routinely rely on science-based projections of physical and economic impacts of climate change on selected regions and economic sectors. But the projections they obtain may not be as reliable or useful as they appear: today’s gold standard for climate impact assessments—model intercomparison projects (MIPs)—fall short in many ways.

MIPs, which use detailed climate and impact models to assess environmental and economic effects of different climate-change scenarios, require international coordination among multiple research groups, and use a rigid modeling structure with a fixed set of climate-change scenarios. This highly dispersed, inflexible modeling approach makes it difficult to produce consistent and timely climate impact assessments under changing economic and environmental policies. In addition, MIPs focus on a single economic sector at a time and do not represent feedbacks among sectors, thus degrading their ability to produce accurate projections of climate impacts and meaningful comparisons of those impacts across multiple sectors.

To overcome these drawbacks, researchers at the MIT Joint Program on the Science and Policy of Global Change propose an alternative method that only a handful of other groups are now pursuing: a self-consistent modeling framework to assess climate impacts across multiple regions and sectors. They describe the Joint Program’s implementation of this method and provide illustrative examples in a new study published in Nature Communications.

Critical to our ability to survive and thrive for generations to come is ongoing access to adequate supplies of clean, fresh water. For the foreseeable future, significant freshwater withdrawals will be needed for irrigation, thermal power plant cooling, and myriad industrial and residential uses. But in many regions, socioeconomic and environmental pressures pose growing threats to both the quantity and quality of local water resources. In order to take effective action to mitigate and/or adapt to rising risks, decision-makers will need robust, prediction-based strategies and tools.

Diatoms are autotrophic siliceous unicellular eukaryotes believed to contribute ~40% of global depth-integrated marine primary production and export of organic carbon from the surface ocean. In addition to providing carbon to sustain ocean food webs they thus contribute significantly to its transfer to the deep ocean, i.e. to the biological carbon pump. Beyond the classical view of diatoms being abundant in nutrient-rich turbulent waters, observations and models both indicate their dominance in meso/submesoscale structures such as fronts and filaments, and as shade flora within the deep chlorophyll maximum. High-resolution observations and simulations, together with inferences from genomics, are changing our understanding of processes regulating and regulated by diatom diversity and abundance. Diatoms display wide variations in size, morphology, and elemental composition, all of which control the quality, quantity, and sinking speed of biogenic matter to depth. As regards carbon export diatoms are unique among the phytoplankton because of their silica shells which provide ballast to marine snow and faecal pellets. Evidence is growing that diatoms are not only efficient transporters of organic carbon to the mesopelagic layer, but can also transport it to the deep ocean. Herein we show that all diatoms are not equal, in that varying Si/C ratios and life strategies will modulate the transfer of carbon to the deep ocean. Except for the Southern Ocean, models predict a decline in the contribution of diatoms to primary production in the future ocean. However, we argue that to better predict the changes of the biological carbon pump in a warmer and acidified ocean we need to address the impacts of physical and chemical changes on diatom diversity, their interactions with other planktonic components, and their complex life histories.

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